INFECTIOUS ENTERITIS - pediagenosis
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Sunday, October 5, 2025

INFECTIOUS ENTERITIS

INFECTIOUS ENTERITIS

VIRAL ENTERITIS
VIRAL ENTERITIS


Infectious enteritis is a common worldwide illness with a multitude of underlying pathogens at play. The majority of infectious diarrheal diseases are acute in onset duration (< 2 weeks). Globally, acute enteritis is the fifth leading cause of death across all ages. Innumerable studies demonstrate that approximately 70% to 75% of acute diarrhea cases are viral in cause. Previously, culture techniques could not isolate most bacteria. With the advent of deep 16S ribosomal polymerase chain reaction sequencing techniques, genetic signatures can now identify bacteria, so it is not necessary to rely on tedious culture techniques. These technologies have isolated a bacterial source in approximately 15% of acute enteritis cases. Protozoal organisms are responsible for a lesser fraction of these cases.

In underprivileged nations, overcrowding, poor sanitation, and a growing prevalence of human immunodeficiency virus (HIV) infections help propagate infectious causes and fuel worldwide mortality rates. In contrast, developed nations exhibit low mortality rates because medical resources are more readily available. In these developed nations, infectious diarrhea still accounts for a significant amount of morbidity and health care expenditure; accurate diagnosis and prompt management are therefore of utmost importance.

Several viral culprits have been elucidated, including norovirus, rotavirus, adenovirus, and astrovirus. Viral gastroenteritides classically exhibit short prodromes of fever, vomiting, and self-limited watery, nonbloody diarrhea. These viruses are generally spread via fecal-oral contamination. Notably, norovirus and enteric adenovirus can also be aerosolized.

Of the five genera of caliciviruses (named for their physical cuplike depressions), two are known causes of human gastroenteritis: norovirus and sapovirus. Noro-virus is notoriously known as a cause of epidemic diarrhea on cruise ships but is a factor in outbreaks in any facility in which people exist in close quarters, such as schools and dormitories. Though the disease may occur throughout the year, a peak has been noted in the winter months. It demonstrates a short incubation period of 1 to 2 days, followed by acute onset of nausea, vomiting, and a high-volume, noninflammatory, non-bloody diarrhea. No enterotoxin unique to norovirus has been isolated, but marked jejunal villous blunting and impairment of brush-border enzymes has been observed that reverts after approximately 2 to 3 weeks following the onset of symptoms. Symptoms can last anywhere from 2 to 4 days. Upon resolution of symptoms, marked reflux, dyspepsia, and, paradoxically, constipation have occurred.

Sapovirus has a clinical presentation similar to that of norovirus. Whereas norovirus is not thought to discriminate based on age, sapovirus may have a predilection for children. Diagnostically, polymerase chain reaction testing is superior to immunoassays in regard to severity, but caution must be used in interpreting positive tests because asymptomatic carrier states are commonly observed. As always, positive tests should be interpreted in the context of clinical symptoms.

Rotavirus has a minimum 2-day incubation period and infamously affects infants and toddlers, leading to severe dehydration with shedding known to last up to 2 weeks. Rotavirus can cause villous blunting with sub- sequent loss of brush-border enzymes (lactase, maltase, sucrase), resulting in severe osmotic diarrhea. Distinct rotavirus proteins have been isolated that cause the patchy mucosal inflammation observed on endoscopy that stimulates an increase of intraluminal fluid secretion via the enteric nervous system and leads to electrolyte abnormalities. Transaminitis is an uncommon “red herring” effect, similar to celiac disease, caused by increased reabsorption via the damaged villi in the enterohepatic circulation. Diagnosis is generally a clinical decision, although assays based on polymerase chain reaction testing exist to identify the virus. Rare manifestations of rotavirus causing seizures and neonatal necrotizing enterocolitis have been reported. Infant rotavirus vaccination should be strictly maintained.

Over 50 subgroups of adenoviruses have been identified so far, with disease manifested most famously in the respiratory tree but extending to numerous organ systems. Specifically, subgroup F viruses make up the enteric-specific adenoviruses. These rarely affect adults but commonly affect children younger than 2 years of age. The viruses may be transmitted via droplet aero-solization or fecal-oral contamination or may exist on fomites resistant to typical disinfectants. A minimum incubation period of 7 to 10 days is typical before the onset of diarrhea, which can last for 1 to 2 weeks. Anti-viral agents are rarely required. In contrast to norovirus disease, enteric adenovirus diarrhea generally does not present with significant vomiting. Enteric adenoviruses are the second most common agents, after rotaviruses, in causing acute diarrhea in children. They may be distinguished with a dedicated enzyme-linked immunosorbent assay kit.

Astroviruses generally affect children, though there have been cases in adults, in whom a much milder diarrheal presentation has been reported. The astro-virus incubates for 3 to 4 days, with diarrhea usually lasting up to 3 days. Again, polymerase chain reaction testing is more sensitive than immunoassays in identifying specific isolates.

In acute viral gastroenteritis, antibiotics are not advocated. Management should focus on aggressive intravenous fluid hydration and/or oral rehydration solutions (e.g., Pedialyte, coconut water, WHO oral rehydration solution). Symptomatically, antimotility agents (e.g., loperamide) and antiemetics may be used. Bacterial pathogens are abundant and should certainly be considered when the diarrhea is particularly severe in regard to abdominal pain, volume depletion, or presence of blood. Standard cultures will test for the most common bacterial causes of enteritis, such as Campylobacter, Salmonella, and Shigella. Dairy and meat products contaminated with Campylobacter, Salmonella, or Shigella dysenteriae are associated with high incidence rates during the summer months.

Campylobacter jejuni and Campylobacter coli cause identical infectious presentations and are detected in contaminated water, poultry, and dairy products. Abdominal pain may be diffuse or localized to the right lower quadrant, simulating appendicitis. Most patients will experience diarrhea lasting up to 1 week, though some may not have diarrhea. Bloody diarrhea may ensue several days into the infectious cycle but will promptly clear. The bacteria may continue to be shed for up to 1 to 2 months following resolution of symptoms. Immunocompromised individuals may have atypical complications of Campylobacter enteritis, including extension into colitis, cholecystitis, pericarditis, and peritonitis. Other extraintestinal complications may occur, as detailed below.

Salmonellae are divided into organisms that cause typhoid fever (discussed separately) and those that do not. Diseases caused by the group of nontyphoidal Salmonellae manifest with gastroenteritis. There are numerous genera adapted to infection primarily in animals that may cause rare human disease (Salmonella dublin in cattle, Salmonella choleraesuis in pigs). Salmonella enteritidis and Salmonella typhimurium, found in mice and poultry, may colonize and/or cause gastroenteritis in humans. Salmonellosis generally results from contaminated foodstuffs, such as egg yolks, vegetables, or peanut butter, and even contact with reptilian animals, such as turtles, lizards, and snakes. When present in an encouraging medium such as meat or dairy products, Salmonella may persist for months and still cause infection. Mass recalls of contaminated food products are not uncommon.

FOOD POISONING: INFECTION TYPE
FOOD POISONING: INFECTION TYPE


Salmonellae have a unique ability to bypass the acidic environment of the stomach prior to colonizing the small intestinal tract, where the normal enteric microbiome serves a protective role by competing for villous binding sites, producing locally toxic fatty acids, secreting antibacterial peptides, and jockeying for nutrition. Hence, antibiotics may have a deleterious role in ablating these protective microflora, resulting in disease that is more symptomatic. Interestingly, Salmonellae can influence enterocytes to endocytose them, promoting invasion. Though an endotoxin has been identified, only a small fraction of Salmonella agents produce and secrete the toxin. The inflammatory response is incompletely understood, but it is clear that Salmonella is able to direct neutrophil traffic to the intestine to ultimately cause diarrhea. The symptoms, however, are similar to those of other causes of acute diarrhea, namely, nausea, vomiting, diarrhea, fever, and abdominal cramping. Bacteremia has been reported in less than 5% of cases, manifesting as osteomyelitis, myocarditis, endovascular infection (e.g., mycotic aneurysms), and hepatobiliary and respiratory infections. Fortunately, the diarrhea is self-limited, lasting between 5 and 10 days. Antibiotics are not indicated unless infection is severe or complex. In fact, they may prolong the carrier state and result in relapse.

During the World Wars, an aseptic reactive arthritis was recognized secondary to immune cross-reactivity from bacteremia with Campylobacter, Salmonella, and Shigella. Also recognized were manifestations of conjunctivitis, mucocutaneous disease, and urethritis/ cervicitis. Interestingly, up to 30% of Guillain-Barré patients have a history of Campylobacter jejuni infection due to antibody cross-reactivity to human neurogangliosides.

Vibrio cholerae and Shigella are common causes of diarrheal epidemics, though the latter primarily causes colitis. V. cholerae is found in fecally contaminated bodies of water or transmitted directly via the fecal-oral route. Consumption of fish and shellfish from contaminated aquatic reservoirs is not uncommon. V. cholerae possesses virulence factors allowing successful colonization of the small intestine; this stimulates secretion of a potent cholera toxin and leads to uninhibited adenylate cyclase stimulation and luminal chloride secretion, resulting in massive volume loss. The incubation period varies in regard to the quantity of ingested inoculum but can last anywhere from 1 to 5 days. The subsequent voluminous diarrhea may take on the appearance of “rice water” and have a malodorous fishy odor. Aggressive volume repletion is critical. V. cholerae responds well to fluoroquinolones, macrolides, and tetracycline antibiotics.

Escherichia coli has numerous strains of which the following are known to contribute to enterically mediated diarrheal illness. Enterotoxigenic Escherichia coli (ETEC) is the most common bacterial cause of acute enteritis in developing nations and the most predominant cause of travelers’ diarrhea. Poor sanitation with contaminated water supplies is to blame. After a brief incubation period, voluminous watery diarrhea may begin and last from 1 day to 1 week. ETEC produces heat-labile toxins similar to those of cholera; they stimulate adenylate cyclase and increase intracellular cyclic adenosine monophosphate, which increases intraluminal chloride secretion and inhibits sodium chloride absorption, resulting in a net movement of fluid into the lumen and creating the watery diarrhea. ETEC also synthesizes a heat-stabile toxin that works by stimulating cyclic guanosine monophosphate to effect this same electrolyte shift. Enteropathogenic E. coli (EPEC) agents are novel in that they do not secrete toxin but directly adhere to the enterocyte, by which means they can introduce their own proteins that change signal transduction within the cell. This intracellular cascade changes intercellular and tight junction permeability, increasing electrolyte and water secretion into the lumen and producing severe, dehydrating watery diarrhea. Polymerase chain reaction assays can assess for ETEC toxin genes and the EPEC adherence factor gene. Enteroaggregative E. coli (EAEC) is a cause of diarrheal outbreaks in both developing and developed nations. It is so named because it was observed that it had a proclivity for binding to HEp-2 cells in tissue culture adherence assays. EAEC synthesizes a unique cytotoxin that causes mucosal tissue disruption. The diagnosis is made via tissue culture adherence assay alone. Enterohemorrhagic E. coli (EHEC), which includes Escherichia coli species O157:H7 and O104:H4, is commonly associated with contaminated beef and other fecally contaminated products (e.g., raw milk, vegetables, and fruits). EHEC produces Shiga toxin, which damages the vascular endothelium. It may begin as non- bloody diarrhea but evolve into hemorrhagic enteritis and colitis. The ensuing inflammatory cascade precipitates a microangiopathic hemolytic anemia and acute kidney injury known as hemolytic-uremic syndrome. This may not occur until 7 to 10 days after the bacteria have been naturally cleared by the immune system; this fact explains the ineffectiveness of antibiotics in ameliorating this condition. Antibiotics may precipitate hemolytic-uremic syndrome and are generally avoided.

FOOD POISONING: TOXIN TYPE
FOOD POISONING: TOXIN TYPE


Aeromonas species survive in fresh-water bodies and chlorinated or polluted water supplies, making them hardy organisms. Diarrhea ranges from watery, secretory choleretic-like diarrhea to bloody, mucusy, dysenteric-like diarrhea. Though Aeromonas will grow on routine microbiologic media cultures, it is not routinely distinguished from other normal flora. Alert the microbiology laboratory if clinical suspicion exists for Aeromonas, so that specific appropriate identification protocols may be implemented. Antibiotics are generally unnecessary, but fluoroquinolone and trimethoprim-sulfamethoxazole may be reasonable if clinically necessary. If the infection is acquired abroad, this may affect its resistance pattern, and these antibiotics may not be efficacious.

Organisms such as Staphylococcus aureus and Bacillus cereus possess a preformed toxin that more commonly leads to nausea and vomiting and rarely diarrhea. S. aureus may contaminate dairy products, eggs, meat, and produce; when these foods are left at normal room temperature, bacteria may rapidly proliferate and synthesize the toxin. Onset of symptoms within 1 to 6 hours eventually produces severe upper intestinal symptoms that resolve spontaneously. B. cereus also produces an enterotoxin commonly found in leftover or “take-out” rice; the temporal onset and symptom severity are the same as with S. aureus.

Protozoal causes of acute enteritis include Cryptosporidium, Giardia, Cystoisospora, Microspora, and Cyclospora. Cryptosporidium and Giardia are the most common protozoal enteric parasites. Unlike Giardia, Cryptosporidium hominis is an intracellular protozoal parasite that causes a self-limited diarrhea in healthy hosts and sometimes a chronic diarrheal scenario in immunocompromised patients. Fecally contaminated drinking water or recreational pool water commonly acts as a reservoir for transmission. Fecal-oral contamination amongst house-hold members or anal-oral intercourse between partners are other modes of transmission. Excystation of oocysts frees four banana-shaped sporozoites, which attach to the small bowel epithelium. These sporozoites mature into meronts, which eventually invade and reinvade host cells. New oocysts are formed, which are expelled luminally into the stool to begin the cycle once again. Fatigue, lethargy, abdominal cramping, nausea, and diarrhea of variable severity ensues 1 to 2 weeks later. Organisms may luminally invade the hepatobiliary tree and cause symptoms of hepatitis, pancreatitis, cholecystitis, or cholangitis owing to stricture, occurring more commonly in immunocompromised individuals (e.g., patients with acquired immunodeficiency syndrome [AIDS]). Because of the need for multiple samples, immunoassay has supplanted microscopy as the test of choice for its ease of use and convenience. Nitazoxanide is generally effective at clearing the infection. AIDS patients should undergo immune reconstitution with antiviral therapy to help clear the infection. Giardia infection is discussed separately.

Cystoisospora belli (formerly, Isospora belli) is an opportunistic protozoan that exists as a sporulated oocyst in fecally contaminated food and water supplies. The microbes must exist outside the host to undergo successful sporulation after 1 to 2 days. Upon ingestion, the sporulated oocysts invade the small and large bowel epithelial cells to complete their life cycle and once again be reexcreted into the host lumen. Intestinal biopsies reveal an inflammatory infiltrate, blunted villi, and crypt hyperplasia. Stool microscopy will demonstrate thin-walled ellipsoidal oocysts. The secretory diarrhea that results can cause significant dehydration, with prerenal kidney injury and electrolyte abnormalities. The disease course is typically self-limited. Treatment is reserved for individuals with severe dehydration, unrelenting disease, or immunocompromise. A regimen of 7 to 10 days of trimethoprim-sulfamethoxazole is effective.

Microsporidium is a poorly understood intracellular spore-forming organism, with over 1300 species identified. Fourteen of these are known to consistently infect humans, particularly those afflicted with AIDS. Entero- cytozoon bieneusi and Encephalitozoon species are the most commonly identified pathogenic organisms. Spores have been observed in respiratory, fecal, and urine specimens and may be inhaled or ingested. The spores use their polar filament to inject their nucleus inside a host cell, where replication occurs with development of multinucleated plasmodial forms that eventually are violently expelled from the host cell, only to infect adjacent cells. In this fashion, they may invade the small intestinal and biliary mucosa. Small intestinal villous blunting, architectural distortion, and crypt hyperplasia are observed, which potentiate malabsorption and secretory mechanisms of diarrhea. Extraintestinal infection of the brain, eyes, and muscles has been reported in healthy patients; AIDS patients have more severe presentations. The patchy nature of the affected small bowel mucosa makes endoscopic biopsy insensitive. However, light microscopy and trichrome staining are successful at detection. Most infections will respond to a short course of albendazole; E. bieneusi is resistant to this organism, however, and may require a macrolide or tetracycline.

Cyclospora cayetanensis is an obligate intracellular parasite that is passed in a noninfective state in the stool and is only known to be pathogenic in humans. C. cayetanensis awaits in hot, humid climates in order to undergo sporulation. Hence, an increased incidence in tropical climates such as those of Southeast Asia, India, and Latin America is observed. Once the organism has sporulated, its ingestion in contaminated water or food-stuffs leads to excystation within the intestinal tract and the release of sporozoites, which infiltrate the epithelial cells, where they undergo replication. Acute watery diarrhea, fatigue, anorexia, and weight loss are common. Stool microscopy will identify the oocysts, although they may be confused with Cryptosporidium; they must be distinguished based on size, because Cryptosporidium (5 microns) is much smaller than Cyclospora (10 microns). A short course of trimethoprim-sulfamethoxazole or nitazoxanide results in prompt diarrheal resolution.

It is worthwhile to note that some bacterial (e.g., Salmonella, Campylobacter) and protozoal organisms (Giardia, Cryptosporidium) may rarely enter a chronic diarrheal phase. Though uncommon in healthy patients, this consideration should be made in immunocompromised populations. A postinfectious irritable bowel syndrome may sometimes result, though this is a diagnosis of exclusion.

REACTIVE ARTHRITIS
REACTIVE ARTHRITIS


Routine stool cultures will not detect all pathogens. Instead, careful history taking and an understanding of the risk factors for these pathogens are required in order to direct assessment for the appropriate organisms by the microbiology department. Polymerase chain reaction testing and immunoassay have made detection much easier. However, some organisms still require multiple stool microscopy specimens to ensure detection. Assessment of ova and parasites should not be ordered routinely but should be reserved for the clinical settings where the patient may be immunocompromised, immunosuppressed, or chronically ill.

Prevention is key in many of these illnesses. It begins with promoting adequate breast feeding to ensure maternal-infant transfer of immunoglobulins. Availability of modern sanitation methods and frequent hand-washing promote optimal hygiene to reduce fecal-oral transfer of many illnesses.

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